Amplification Of Long Template PCR Products

University of Birmingham
Biosciences
Research Assistant

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Company:

MilliporeSigma

Product Name:

Expand Long Template PCR system

Catalog Number:

11681834001

I was trying to clone 18 Kb PCR product (PCR product is a 12 gene operon) from Bacillus subtilis into E. coli. Tried several PCR amplification kit but found htat Sigma's Expand Long Template PCR system performed very well to amplify 18 kb operon without any errors.

Experimental Design and Results Summary

Application

Generation of Long PCR fragment for various cloning purposes

Starting Material

250 ng of Bacillus subtilis genomic DNA

Protocol Overview

Protocol was performed according to manufacturer's instructions which came with PCR amplification kit. 50 microliter reactions were setup with 250 ng Bacillus subtilis DNA as template for amplification. Used Buffer 3 for amplification which contains 2.75 mM MgCl2 for boost DNA polymerases activity. In thermal cycling, 2 step extension was performed according to kit's instructions.

Tips

Kit comes with different Buffer systems. Use accordingly w.r.t length of fragment to be generated. Pre-heat Buffers to 50 degree C.

Results Summary

50 microliter PCR reactions with Expand Long Template PCR system using Buffer 3 component yielded 4 microgram of 18 Kb PCR product. Quality was checked by nanodrop measurements. PCR fragment was used to construct various plasmids for cloning.

DOI or PMID #

N/A

Additional Notes

N/A

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Summary

The Good

Easy to follow protocol. Best of long template PCR.

The Bad

None

The Bottom Line

Need to standardize PCR with different buffer components which come with kit to get ideal amplification of your target DNA. Also sometimes need to perform gradient PCR.

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